tv.qiagenbioinformatics.com

Formatting and uploading your dataset into IPA

Tue, 01 Jul 2025 11:38:08 GMT

Learn how to format your own data and how to upload it into IPA. IPA can upload your experimental data to enable you to perform pathways visualization, literature searches on the molecules in the dataset, and to perform the many different types of analyses offered in IPA. In this webinar we will use gene expression data as an example dataset.

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Timestamp placements and descriptions:

0:00-2:09 Introduction to the webinar

2:10-3:44 Example dataset used for the live demonstration

3:45-7:58 Dataset formatting rules

7:59-8:57 Multiple Observation dataset example

8:58-11:42 Types of data measurement values you can use

11:43-13:03 Additional formatting rules

13:04-14:32 Uploading files from Cufflinks software

14:33-16:22 Live demo: where you can start the upload process

16:23-26:06 Uploading data with Core Analysis options

26:07-27:07 Setting up the type of Core Analysis to be used

27:08-29:21 Create Core Analysis page: General Settings

29:22-30:38 Create Core Analysis page: Network options

30:39-31:26 Create Core Analysis page: Other filtering options

31:27-32:57 Create Core Analysis page: Preview dataset options

32:58-34:31 Create Core Analysis page: Applying cutoffs

34:32-35:36 How to start the analysis

35:37-38:07 Summary of the webinar

38:08-end Customer Support and additional resources information

Introduction to Analysis Match in IPA - Compare your gene and protein...

Wed, 14 Feb 2024 13:27:00 GMT

With all the expression datasets that are available to the public, wouldn’t it be great to compare them to your own expression data, so you could get a better understanding of the underlying biology of your data?

With QIAGEN IPA Analysis Match, you can compare your expression data with well over 100,000 publicly available datasets that have been processed and analyzed in IPA, as well as all the IPA analyses that you have performed to date.

In this webinar, we will cover how Analysis Match works and demonstrate this feature with a live demonstration. Feel free to follow along with your analysis and ask questions along the way!

Compare and contextualize your results using QIAGEN Ingenuity Pathway Analysis

Wed, 23 Aug 2023 16:04:12 GMT

Take your QIAGEN Ingenuity Pathway Analysis (IPA) analyses to the next level by comparing them to your own analyses (different time points, treatments, cell lines, diseases and more) or to a library of over 100K precomputed datasets to find similar or opposite biological signatures. Identify key genes or entities and then explore how they are expressed across normal tissues, diseases and more from over 600K biological samples to gain deep context.

In this training, you'll learn how to:

• Get advanced insights with the QIAGEN IPA Analysis Match comparison feature to compare large numbers of your own datasets and/or public datasets (from GEO, SRA, cancer collections and more)
• Use and interpret the IPA Activity Plot feature to identify key genes and regulators common across datasets
• Explore identified key genes in Land Explorer to query and visualize expression across tissues, disease states and mutation status, including survival curves

We will feature these specific IPA analyses:
• Analysis Match, Activity Plot and Pattern Search
• Land Explorer
• Summer 2023 update and more